SEED Subsystem: Glycine and Serine Utilization in Pantoea sp. MT58

Experiments:

Role Gene Name Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50  
⨯
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) IAI47_00695 +0.1
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) IAI47_03765 -0.9
Cystathionine beta-synthase (EC 4.2.1.22) No genes
Cystathionine gamma-lyase (EC 4.4.1.1) No genes
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) IAI47_03725 -0.8
  IAI47_07630 +0.6
  IAI47_11750 +0.1
  IAI47_19705 +0.3
  IAI47_20620 +0.2
  IAI47_20775 -0.1
D-serine dehydratase (EC 4.3.1.18) No genes
D-serine dehydratase transcriptional activator IAI47_13360 -0.2
D-serine permease DsdX No genes
D-serine/D-alanine/glycine transporter IAI47_12495 -0.8
Glycerate kinase (EC 2.7.1.31) IAI47_04105 -0.4
Glycine cleavage system H protein IAI47_03770 -1.2
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) IAI47_03775 -1.2
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
L-serine dehydratase (EC 4.3.1.17) IAI47_01635 +0.0
  IAI47_08785 -0.2
L-serine dehydratase 1 (EC 4.3.1.17) No genes
L-serine dehydratase, alpha subunit (EC 4.3.1.17) No genes
L-serine dehydratase, beta subunit (EC 4.3.1.17) No genes
Monoamine oxidase (1.4.3.4) No genes
Phosphoserine aminotransferase (EC 2.6.1.52) IAI47_12865 -2.2
Phosphoserine phosphatase (EC 3.1.3.3) IAI47_13095 +0.1
  IAI47_16350 -1.1
Serine hydroxymethyltransferase (EC 2.1.2.1) IAI47_04960 N.D.
Serine transporter IAI47_01640 +0.1
  IAI47_14110 +0.0
Seryl-tRNA synthetase (EC 6.1.1.11) IAI47_12895 N.D.
Threonine dehydratase, catabolic (EC 4.3.1.19) IAI47_21010 +0.3

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Or view this subsystem at the SEED (slow)