SEED Subsystem: Photorespiration (oxidative C2 cycle) in Klebsiella michiganensis M5al

Experiments:

Role Gene Name RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x  
⨯
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) BWI76_RS07000 -0.1
  BWI76_RS24825 +0.3
2-oxoglutarate/malate translocator BWI76_RS04375 -0.0
  BWI76_RS16110 +0.0
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) BWI76_RS23880 -0.2
Catalase (EC 1.11.1.6) BWI76_RS11755 -0.1
  BWI76_RS13925 -0.1
  BWI76_RS20010 +0.3
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) No genes
D-glycerate 3-kinase (EC 2.7.1.31), plant type No genes
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Expressed protein possibly involved in photorespiration No genes
Glycerate kinase (EC 2.7.1.31) BWI76_RS07025 -0.1
  BWI76_RS22820 +0.1
  BWI76_RS23730 +0.1
  BWI76_RS24820 -0.1
Glycine cleavage system H protein BWI76_RS23875 -0.2
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) BWI76_RS23870 -0.2
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE No genes
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF No genes
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD BWI76_RS17050 -0.4
Glycolate oxidase (EC 1.1.3.15) No genes
Glycolate permease No genes
Glyoxylate carboligase (EC 4.1.1.47) BWI76_RS06990 -0.2
Hydroxypyruvate reductase (EC 1.1.1.81) No genes
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) BWI76_RS10590 -0.2
Malate synthase (EC 2.3.3.9) BWI76_RS01660 -2.6
Malate synthase G (EC 2.3.3.9) No genes
Malyl-CoA lyase (EC 4.1.3.24) No genes
Phosphoglycolate phosphatase (EC 3.1.3.18) BWI76_RS26065 -1.4
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) BWI76_RS21225 N.D.
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes

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