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SEED Subsystem: Ton and Tol transport systems in
Pseudomonas syringae pv. syringae B728a
Experiments:
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Role
Gene
Name
library passed through aphids in food, 72 hours
⨯
4-hydroxybenzoyl-CoA thioesterase family active site
Psyr
_1411
+0.2
Aerobactin siderophore receptor IutA
No genes
Biopolymer transport ExbD protein
No genes
Biopolymer transport protein ExbD/TolR
Psyr
_0137
-1.8
Psyr
_0204
N.D.
Psyr
_0874
-0.2
Psyr
_1634
N.D.
Psyr
_2289
N.D.
Psyr
_4482
N.D.
Psyr
_4498
-1.3
Colicin I receptor precursor
No genes
Ferric receptor CfrA
No genes
Ferric siderophore transport system, biopolymer transport protein ExbB
No genes
Ferric siderophore transport system, biopolymer transport protein ExbD
No genes
Ferric siderophore transport system, periplasmic binding protein TonB
Psyr
_0135
+0.3
Psyr
_0203
N.D.
Psyr
_0486
-1.6
Psyr
_0875
-0.4
Psyr
_2287
-0.0
Psyr
_4480
+0.7
Psyr
_4496
-0.2
Galactose-regulated TonB-dependent outer membrane receptor
No genes
Haemin uptake system outer membrane receptor
No genes
Hemophore HasA
No genes
Mannosides-regulated TonB-dependent outer membrane receptor
No genes
MotA/TolQ/ExbB proton channel family protein
Psyr
_0136
+0.6
Psyr
_0205
N.D.
Psyr
_0877
-0.3
Psyr
_1412
N.D.
Psyr
_1633
-2.5
Psyr
_2288
+0.3
Psyr
_4481
+0.1
Psyr
_4497
-0.0
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
No genes
Outer membrane ferripyoverdine receptor
Psyr
_1784
+0.2
Outer membrane lipoprotein omp16 precursor
Psyr
_1316
-0.0
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
No genes
Peptidoglycan-associated lipoprotein precursor
No genes
Predicted b-glucoside-specific TonB-dependent outer membrane receptor
No genes
Protein-L-isoaspartate O-methyltransferase (
EC 2.1.1.77
)
Psyr
_1372
-2.3
Putative OMR family iron-siderophore receptor precursor
No genes
Putative TolA protein
No genes
Putative TolA protein involved in Tol transport system in Chlamydia
No genes
Putative Ton-B dependent hemine receptor
No genes
Putative tonB protein
No genes
Sialic acid-regulated TonB-dependent outer membrane receptor
No genes
TPR domain protein, putative component of TonB system
No genes
TPR repeat containing exported protein
No genes
Tol biopolymer transport system, TolR protein
Psyr
_1413
N.D.
TolA protein
Psyr
_1414
N.D.
TonB system biopolymer transport component
No genes
TonB-dependent hemin , ferrichrome receptor
No genes
TonB-dependent receptor
No genes
TonB-dependent siderophore receptor
No genes
Type I secretion outer membrane protein, TolC precursor
Psyr
_0543
+0.4
Psyr
_0935
+0.1
Psyr
_3077
-0.1
Psyr
_3159
-0.1
iron-chelator utilization protein
Psyr
_3927
-0.1
putative TolA function
No genes
tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins
Psyr
_1415
N.D.
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter baumannii LAC-4
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cellulophaga baltica 18
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia amylovora T8
Erwinia tracheiphila HP pepo 2.2
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC100
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Klebsiella pneumoniae MKP103
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Methylophilus sp. DMC18
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea agglomerans CFBP13505 P0401
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas aeruginosa PA14
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas lactucae CFBP13502
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. BP01
Pseudomonas sp. DMC3
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas sp. SVBP6
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodanobacter sp000427505 FW510-R12
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingobium sp. HT1-2
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Synechocystis sp000284455 PCC 6803
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthobacter sp. DMC5
Xanthomonas campestris pv. campestris strain 8004
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