SEED Subsystem: TCA Cycle in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name Deoxyribonucleic from herring sperm 10 mg/mL (C)  
⨯
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) BPHYT_RS08110 N.D.
  BPHYT_RS10505 -0.2
Aconitate hydratase (EC 4.2.1.3) No genes
Aconitate hydratase 2 (EC 4.2.1.3) BPHYT_RS10160 -0.1
Aconitate hydratase X, predicted No genes
Aconitate hydratase large subunit (EC 4.2.1.3) No genes
Aconitate hydratase small subunit (EC 4.2.1.3) No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) No genes
Citrate synthase (si) (EC 2.3.3.1) BPHYT_RS19980 +0.4
  BPHYT_RS27440 +0.2
  BPHYT_RS33920 +1.9
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) BPHYT_RS08120 N.D.
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) BPHYT_RS12830 -1.3
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) BPHYT_RS08115 N.D.
Fumarate hydratase class I (EC 4.2.1.2) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) BPHYT_RS06985 +0.6
Fumarate hydratase class II (EC 4.2.1.2) BPHYT_RS14615 -0.0
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) BPHYT_RS15730 -0.7
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) No genes
Malate dehydrogenase (EC 1.1.1.37) BPHYT_RS27110 +0.1
  BPHYT_RS28460 +0.8
  BPHYT_RS33955 N.D.
Malate:quinone oxidoreductase (EC 1.1.5.4) No genes
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) BPHYT_RS33935 N.D.
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) BPHYT_RS33930 N.D.
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) BPHYT_RS16340 -1.0
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) BPHYT_RS16345 -2.2
Transcriptional regulator of succinyl CoA synthetase operon No genes
hypothetical protein that often co-occurs with aconitase BPHYT_RS25550 N.D.

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