SEED Subsystem: tRNA processing in Xanthomonas campestris pv. campestris strain 8004

Experiments:

Role Gene Name Citric Acid 16.67 mM (C)  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) No genes
Ribonuclease D (EC 3.1.26.3) Xcc-8004.2248.1 -0.1
Ribonuclease P protein component (EC 3.1.26.5) Xcc-8004.5410.1 N.D.
Ribonuclease PH (EC 2.7.7.56) Xcc-8004.1221.1 +1.1
Ribonuclease T (EC 3.1.13.-) Xcc-8004.3366.1 +0.1
Ribonuclease Z (EC 3.1.26.11) No genes
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) Xcc-8004.3137.1 +0.6
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) Xcc-8004.1469.1 -0.1
  Xcc-8004.1961.1 -2.0
  Xcc-8004.351.1 +0.1
tRNA pseudouridine synthase B (EC 4.2.1.70) Xcc-8004.2004.1 -0.2
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase Xcc-8004.2224.1 -2.1
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) Xcc-8004.2409.1 N.D.
tRNAHis-5'-guanylyltransferase No genes

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