SEED Subsystem: Urea decomposition in Pseudomonas stutzeri RCH2

Experiments:

Role Gene Name Def Carbenicillin 0.008 mg/ml  
⨯
Allophanate hydrolase (EC 3.5.1.54) Psest_2352 +0.4
Eukaryotic-type low-affinity urea transporter Psest_1176 +1.0
HupE-UreJ family metal transporter Psest_0544 N.D.
Nickel transporter UreH No genes
Partial urea carboxylase (EC 6.3.4.6) No genes
Partial urea carboxylase 2 (EC 6.3.4.6) No genes
Urea ABC transporter, ATPase protein UrtD Psest_0564 N.D.
Urea ABC transporter, ATPase protein UrtE Psest_0563 +0.9
Urea ABC transporter, permease protein UrtB Psest_0566 +1.1
Urea ABC transporter, permease protein UrtC Psest_0565 +0.2
Urea ABC transporter, urea binding protein No genes
Urea carboxylase (EC 6.3.4.6) Psest_2351 -0.3
Urea carboxylase-related ABC transporter, ATPase protein Psest_2347 -0.1
  Psest_2365 +0.6
Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein Psest_2355 +0.2
  Psest_2368 +0.3
Urea carboxylase-related ABC transporter, permease protein Psest_2346 +0.6
  Psest_2364 -0.7
Urea carboxylase-related amino acid permease No genes
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) Psest_2348 +0.1
  Psest_2349 +0.0
Urea channel UreI No genes
Urease accessory protein UreD Psest_0561 +0.6
Urease accessory protein UreE Psest_0548 +0.2
Urease accessory protein UreF Psest_0547 +1.0
Urease accessory protein UreG Psest_0545 +0.8
Urease alpha subunit (EC 3.5.1.5) Psest_0557 +0.3
Urease beta subunit (EC 3.5.1.5) Psest_0558 -0.0
Urease gamma subunit (EC 3.5.1.5) Psest_0560 +0.2

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