SEED Subsystem: DNA Repair Base Excision in Pseudomonas stutzeri RCH2

Experiments:

Role Gene Name Def Carbenicillin 0.008 mg/ml  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC Psest_1648 -0.7
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD Psest_2150 +0.5
  Psest_2179 -0.2
DNA ligase (EC 6.5.1.2) Psest_2508 N.D.
  Psest_0318 +1.2
DNA polymerase I (EC 2.7.7.7) Psest_4219 -3.4
DNA polymerase II (EC 2.7.7.7) Psest_1519 +0.0
DNA-3-methyladenine glycosylase (EC 3.2.2.20) Psest_0012 +0.2
  Psest_3029 N.D.
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) Psest_1910 +0.3
Endonuclease III (EC 4.2.99.18) Psest_3118 -0.3
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) Psest_3180 -0.8
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) Psest_0239 -0.5
Ku domain protein Psest_2149 -0.7
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Psest_1544 +0.1
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 Psest_3107 -0.6

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