SEED Subsystem: Bacterial Chemotaxis in Herbaspirillum seropedicae SmR1

Experiments:

Role Gene Name L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days  
⨯
Aerotaxis sensor receptor protein HSERO_RS02555 +0.2
  HSERO_RS15415 -0.2
Chemotaxis protein CheC -- inhibitor of MCP methylation No genes
Chemotaxis protein CheD HSERO_RS10120 -2.1
  HSERO_RS21130 -0.0
Chemotaxis protein CheV (EC 2.7.3.-) HSERO_RS09765 +0.2
  HSERO_RS18625 -0.1
Chemotaxis protein CheX No genes
Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) HSERO_RS02725 +0.0
  HSERO_RS03125 +0.2
  HSERO_RS08470 -0.1
  HSERO_RS10115 -3.6
  HSERO_RS15155 +0.0
  HSERO_RS16925 -0.0
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY HSERO_RS03100 +0.2
  HSERO_RS07820 -0.3
  HSERO_RS08445 +0.2
  HSERO_RS08475 +0.3
  HSERO_RS08490 N.D.
  HSERO_RS09870 -0.4
  HSERO_RS10130 N.D.
  HSERO_RS12350 +0.0
  HSERO_RS14960 -1.2
  HSERO_RS16915 -0.2
Chemotaxis response - phosphatase CheZ HSERO_RS10135 +0.6
  HSERO_RS15530 -2.8
Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) HSERO_RS03130 -0.4
  HSERO_RS08460 +0.2
  HSERO_RS10125 -4.9
  HSERO_RS15140 +0.4
  HSERO_RS16920 +0.0
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) HSERO_RS15955 -0.1
Flagellar motor switch protein FliG HSERO_RS10305 -5.0
Flagellar motor switch protein FliM HSERO_RS10275 -4.9
Flagellar motor switch protein FliN HSERO_RS10270 N.D.
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) No genes
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE No genes
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) HSERO_RS00150 -0.1
  HSERO_RS01955 -0.0
  HSERO_RS02230 -0.4
  HSERO_RS02265 -0.0
  HSERO_RS02680 +0.1
  HSERO_RS03115 +0.2
  HSERO_RS03600 -0.1
  HSERO_RS04195 -0.1
  HSERO_RS04885 -0.1
  HSERO_RS05490 +0.0
  HSERO_RS05725 +0.1
  HSERO_RS06285 +0.2
  HSERO_RS06290 +0.4
  HSERO_RS06295 +0.0
  HSERO_RS06345 -0.2
  HSERO_RS06470 -0.2
  HSERO_RS06520 +0.0
  HSERO_RS06665 +0.0
  HSERO_RS06695 -0.0
  HSERO_RS06830 -0.0
  HSERO_RS06840 +0.1
  HSERO_RS07325 -0.3
  HSERO_RS07825 -0.2
  HSERO_RS08370 -0.1
  HSERO_RS08505 +0.2
  HSERO_RS10810 +0.3
  HSERO_RS11510 +0.1
  HSERO_RS13110 +0.2
  HSERO_RS13355 -0.0
  HSERO_RS13400 -0.0
  HSERO_RS13665 -0.1
  HSERO_RS13680 -0.1
  HSERO_RS14620 +0.0
  HSERO_RS14625 -0.0
  HSERO_RS15165 +0.1
  HSERO_RS15215 +0.0
  HSERO_RS15675 -0.0
  HSERO_RS15790 -3.6
  HSERO_RS15850 +0.1
  HSERO_RS16185 +0.0
  HSERO_RS17195 +0.1
  HSERO_RS17425 +0.1
  HSERO_RS17590 -0.0
  HSERO_RS17695 -0.1
  HSERO_RS18565 +0.1
  HSERO_RS18620 +0.0
  HSERO_RS18745 +0.0
  HSERO_RS18830 +0.0
  HSERO_RS19690 +0.1
  HSERO_RS19820 +0.2
  HSERO_RS20085 +0.0
  HSERO_RS20115 +0.0
  HSERO_RS22675 +0.1
  HSERO_RS22700 -0.0
  HSERO_RS22975 -0.1
  HSERO_RS23045 -0.2
  HSERO_RS23075 +0.0
  HSERO_RS23215 +0.0
  HSERO_RS23225 -0.2
  HSERO_RS23285 +0.0
  HSERO_RS23915 -0.0
Methyl-accepting chemotaxis protein II (aspartate chemoreceptor protein) No genes
Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) No genes
Methyl-accepting chemotaxis protein IV (dipeptide chemoreceptor protein) No genes
Positive regulator of CheA protein activity (CheW) HSERO_RS03120 +0.3
  HSERO_RS08455 +0.0
  HSERO_RS14950 -4.3
Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) No genes
Signal transduction histidine kinase CheA (EC 2.7.3.-) HSERO_RS03110 +0.2
  HSERO_RS08480 +0.1
  HSERO_RS12370 -0.1
  HSERO_RS14955 -4.1
  HSERO_RS15535 -3.6
  HSERO_RS19165 -0.1
  HSERO_RS22605 +0.0

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