SEED Subsystem: tRNA processing in Herbaspirillum seropedicae SmR1

Experiments:

Role Gene Name L-Malic (C) with ammonium chloride; anaerobic; 8 days  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) HSERO_RS07240 -0.0
  HSERO_RS16545 +0.2
Ribonuclease D (EC 3.1.26.3) No genes
Ribonuclease P protein component (EC 3.1.26.5) HSERO_RS21685 N.D.
Ribonuclease PH (EC 2.7.7.56) HSERO_RS10655 -1.2
Ribonuclease T (EC 3.1.13.-) No genes
Ribonuclease Z (EC 3.1.26.11) No genes
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) No genes
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) HSERO_RS10860 +0.3
  HSERO_RS16485 +0.6
tRNA pseudouridine synthase B (EC 4.2.1.70) HSERO_RS17985 -0.0
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase HSERO_RS03615 +0.1
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) HSERO_RS11045 N.D.
tRNAHis-5'-guanylyltransferase No genes

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