SEED Subsystem: TCA Cycle in Herbaspirillum seropedicae SmR1

Experiments:

Role Gene Name L-Malic (C) with ammonium chloride; anaerobic; 8 days  
⨯
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) HSERO_RS14885 N.D.
Aconitate hydratase (EC 4.2.1.3) No genes
Aconitate hydratase 2 (EC 4.2.1.3) No genes
Aconitate hydratase X, predicted No genes
Aconitate hydratase large subunit (EC 4.2.1.3) No genes
Aconitate hydratase small subunit (EC 4.2.1.3) No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) No genes
Citrate synthase (si) (EC 2.3.3.1) HSERO_RS06380 -0.1
  HSERO_RS14890 N.D.
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) HSERO_RS14875 N.D.
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) HSERO_RS07315 N.D.
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) HSERO_RS14880 N.D.
Fumarate hydratase class I (EC 4.2.1.2) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) HSERO_RS07760 N.D.
Fumarate hydratase class II (EC 4.2.1.2) HSERO_RS07610 -0.0
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) HSERO_RS07015 +0.1
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) No genes
Malate dehydrogenase (EC 1.1.1.37) HSERO_RS14925 N.D.
  HSERO_RS16685 +0.7
Malate:quinone oxidoreductase (EC 1.1.5.4) HSERO_RS21125 +1.5
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) HSERO_RS14905 N.D.
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) HSERO_RS14900 N.D.
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) HSERO_RS03285 -2.1
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) HSERO_RS03280 N.D.
Transcriptional regulator of succinyl CoA synthetase operon No genes
hypothetical protein that often co-occurs with aconitase No genes

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