SEED Subsystem: DNA-replication in Herbaspirillum seropedicae SmR1

Experiments:

Role Gene Name L-Malic (C) with ammonium chloride; anaerobic; 8 days  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) HSERO_RS06165 -0.9
ATP-dependent DNA helicase RecQ HSERO_RS02465 -0.0
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA HSERO_RS00005 N.D.
  HSERO_RS03155 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) HSERO_RS02080 N.D.
DNA polymerase I (EC 2.7.7.7) HSERO_RS02260 -2.2
DNA polymerase II (EC 2.7.7.7) HSERO_RS12200 +0.0
DNA polymerase III alpha subunit (EC 2.7.7.7) HSERO_RS17825 N.D.
DNA polymerase III beta subunit (EC 2.7.7.7) HSERO_RS00010 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) HSERO_RS07285 N.D.
DNA polymerase III delta prime subunit (EC 2.7.7.7) HSERO_RS13015 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) HSERO_RS02970 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) HSERO_RS11365 -0.0
  HSERO_RS17105 -0.7
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) HSERO_RS18370 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) HSERO_RS04360 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN HSERO_RS03060 -0.4
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication HSERO_RS01525 +1.1
  HSERO_RS21775 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA HSERO_RS02090 -1.7
Holliday junction DNA helicase RuvB HSERO_RS02095 -0.1
Primosomal protein I No genes
Primosomal replication protein N HSERO_RS10375 N.D.
Primosomal replication protein N prime prime No genes
RecA protein HSERO_RS03270 -0.5
Recombination protein RecR HSERO_RS18355 -0.5
Replicative DNA helicase (EC 3.6.1.-) HSERO_RS10390 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) HSERO_RS13965 -1.1
Transcription-repair coupling factor HSERO_RS15180 -0.7

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