SEED Subsystem: Entner-Doudoroff Pathway in Herbaspirillum seropedicae SmR1

Experiments:

Role Gene Name Carbon source 2-Deoxy-D-Ribose 5 mM  
⨯
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) No genes
2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type (EC 5.4.2.1) No genes
2-dehydro-3-deoxygluconate aldolase (EC 4.1.2-) No genes
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) HSERO_RS07545 -0.3
  HSERO_RS08715 -0.2
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) No genes
6-phosphogluconolactonase (EC 3.1.1.31) HSERO_RS15795 +0.2
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type No genes
Aldehyde dehydrogenase (EC 1.2.1.3) HSERO_RS04810 +0.0
  HSERO_RS05115 -3.2
  HSERO_RS05710 +0.1
  HSERO_RS09465 -1.0
  HSERO_RS11260 -0.2
  HSERO_RS17620 +0.0
  HSERO_RS19755 +0.1
D-glycerate 2-kinase (EC 2.7.1.-) No genes
Enolase (EC 4.2.1.11) HSERO_RS13910 N.D.
Glucokinase (EC 2.7.1.2) HSERO_RS17870 -0.0
Gluconate dehydratase (EC 4.2.1.39) HSERO_RS05150 -0.0
Gluconokinase (EC 2.7.1.12) HSERO_RS05475 -0.2
Gluconolactonase (EC 3.1.1.17) HSERO_RS19370 N.D.
  HSERO_RS20090 +0.5
Glucose 1-dehydrogenase (EC 1.1.1.47) No genes
Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) No genes
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) HSERO_RS05510 N.D.
Hexokinase (EC 2.7.1.1) No genes
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) HSERO_RS07125 N.D.
Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NAD) No genes
Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NADP) (EC 1.2.1.9) No genes
OpcA, an allosteric effector of glucose-6-phosphate dehydrogenase, actinobacterial No genes
OpcA, an allosteric effector of glucose-6-phosphate dehydrogenase, cyanobacterial No genes
Phosphogluconate dehydratase (EC 4.2.1.12) HSERO_RS05520 N.D.
Phosphoglycerate kinase (EC 2.7.2.3) HSERO_RS03345 N.D.
Phosphoglycerate mutase (EC 5.4.2.1) HSERO_RS00820 N.D.
  HSERO_RS02035 +0.1
Polyphosphate glucokinase (EC 2.7.1.63) No genes
Pyruvate kinase (EC 2.7.1.40) HSERO_RS03350 -1.3

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