SEED Subsystem: Alginate metabolism in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name Nickel (II) chloride 0.0025 M  
⨯
Alginate biosynthesis protein Alg8 Pf6N2E2_5387 -0.1
Alginate biosynthesis protein AlgX Pf6N2E2_5382 -0.2
Alginate biosynthesis transcriptional activator Pf6N2E2_5683 N.D.
Alginate lyase (EC 4.2.2.3) No genes
Alginate lyase precursor (EC 4.2.2.3) Pf6N2E2_4663 -0.0
  Pf6N2E2_4664 -0.2
  Pf6N2E2_4665 +0.1
  Pf6N2E2_5381 -0.3
GDP-mannose 6-dehydrogenase (EC 1.1.1.132) Pf6N2E2_5388 +0.1
Hexuronate transporter Pf6N2E2_5056 +0.2
  Pf6N2E2_5978 +0.1
  Pf6N2E2_6017 -0.1
Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) Pf6N2E2_4241 -0.1
  Pf6N2E2_5377 +0.1
Mannose-6-phosphate isomerase (EC 5.3.1.8) Pf6N2E2_2741 +0.4
  Pf6N2E2_3574 -3.4
  Pf6N2E2_5377 +0.1
  Pf6N2E2_5763 +0.4
Pectin degradation protein KdgF No genes
Phosphomannomutase (EC 5.4.2.8) Pf6N2E2_4374 +0.1
Poly(beta-D-mannuronate) C5 epimerase precursor (EC 5.1.3.-) Pf6N2E2_5383 +0.0
Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) Pf6N2E2_5380 -0.0
RNA polymerase sigma-H factor AlgT Pf6N2E2_2756 -0.8
alginate biosynthesis protein AlgJ Pf6N2E2_5379 -0.2
alginate o-acetyltransferase AlgF Pf6N2E2_5378 -0.1
outer membrane protein AlgE Pf6N2E2_5384 +0.0
poly(beta-D-mannuronate) lyase (EC 4.2.2.3) No genes

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