SEED Subsystem: tRNA processing in Cupriavidus basilensis FW507-4G11

Experiments:

Role Gene Name R2A with nitrate 150 mM  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) RR42_RS06450 -3.3
  RR42_RS37480 +0.1
Ribonuclease D (EC 3.1.26.3) No genes
Ribonuclease P protein component (EC 3.1.26.5) RR42_RS20835 N.D.
Ribonuclease PH (EC 2.7.7.56) RR42_RS04890 +0.7
Ribonuclease T (EC 3.1.13.-) No genes
Ribonuclease Z (EC 3.1.26.11) No genes
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) No genes
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) RR42_RS11890 -0.0
  RR42_RS14370 N.D.
tRNA pseudouridine synthase B (EC 4.2.1.70) RR42_RS12835 +0.7
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase RR42_RS02855 +0.5
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) RR42_RS11380 N.D.
tRNAHis-5'-guanylyltransferase No genes

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