SEED Subsystem: Glycine and Serine Utilization in Cupriavidus basilensis FW507-4G11

Experiments:

Role Gene Name R2A with Cobalt chloride 0.3 mM  
⨯
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) RR42_RS22865 -0.0
  RR42_RS28295 +0.1
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) RR42_RS20060 -0.9
Cystathionine beta-synthase (EC 4.2.1.22) No genes
Cystathionine gamma-lyase (EC 4.4.1.1) No genes
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) RR42_RS00950 +0.4
  RR42_RS02235 +0.5
  RR42_RS03865 -0.3
  RR42_RS05155 +0.0
  RR42_RS10510 -0.1
  RR42_RS10615 -0.3
  RR42_RS10620 +0.2
  RR42_RS20535 +0.5
  RR42_RS26540 +0.5
  RR42_RS27010 -1.2
  RR42_RS27410 -0.4
  RR42_RS33330 -0.4
  RR42_RS33660 -1.0
  RR42_RS34610 -0.4
  RR42_RS37380 -0.2
D-serine dehydratase (EC 4.3.1.18) RR42_RS28450 -0.3
D-serine dehydratase transcriptional activator RR42_RS21515 -0.2
  RR42_RS28455 -0.2
D-serine permease DsdX No genes
D-serine/D-alanine/glycine transporter RR42_RS28305 +0.1
Glycerate kinase (EC 2.7.1.31) RR42_RS23230 -0.1
Glycine cleavage system H protein RR42_RS20065 -0.4
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) RR42_RS20070 +0.3
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
L-serine dehydratase (EC 4.3.1.17) RR42_RS20080 -0.3
L-serine dehydratase 1 (EC 4.3.1.17) No genes
L-serine dehydratase, alpha subunit (EC 4.3.1.17) No genes
L-serine dehydratase, beta subunit (EC 4.3.1.17) No genes
Monoamine oxidase (1.4.3.4) No genes
Phosphoserine aminotransferase (EC 2.6.1.52) RR42_RS04455 N.D.
Phosphoserine phosphatase (EC 3.1.3.3) RR42_RS07660 N.D.
  RR42_RS17230 -0.8
  RR42_RS21330 +0.2
  RR42_RS28245 +0.0
Serine hydroxymethyltransferase (EC 2.1.2.1) RR42_RS15485 N.D.
Serine transporter No genes
Seryl-tRNA synthetase (EC 6.1.1.11) RR42_RS04360 N.D.
Threonine dehydratase, catabolic (EC 4.3.1.19) RR42_RS05695 +0.0
  RR42_RS11110 +0.1

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