SEED Subsystem: DNA-replication in Paraburkholderia bryophila 376MFSha3.1

Experiments:

Role Gene Name Phenylacetic (C)  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) H281DRAFT_04672 -0.8
ATP-dependent DNA helicase RecQ H281DRAFT_03279 -0.2
  H281DRAFT_06595 N.D.
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA H281DRAFT_02315 N.D.
  H281DRAFT_04708 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) H281DRAFT_04253 N.D.
DNA polymerase I (EC 2.7.7.7) H281DRAFT_06022 +0.4
DNA polymerase II (EC 2.7.7.7) H281DRAFT_01369 -0.1
DNA polymerase III alpha subunit (EC 2.7.7.7) H281DRAFT_00311 N.D.
  H281DRAFT_04985 -0.1
DNA polymerase III beta subunit (EC 2.7.7.7) H281DRAFT_02314 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) H281DRAFT_00124 N.D.
DNA polymerase III delta prime subunit (EC 2.7.7.7) H281DRAFT_00929 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) H281DRAFT_06323 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) H281DRAFT_03997 -0.0
  H281DRAFT_04396 N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) H281DRAFT_00832 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) H281DRAFT_06009 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN H281DRAFT_04692 -0.5
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) H281DRAFT_05087 -1.0
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) H281DRAFT_05086 -0.4
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) H281DRAFT_05085 -0.8
Helicase PriA essential for oriC/DnaA-independent DNA replication H281DRAFT_02402 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA H281DRAFT_04254 N.D.
Holliday junction DNA helicase RuvB H281DRAFT_04255 N.D.
Primosomal protein I No genes
Primosomal replication protein N H281DRAFT_00790 N.D.
Primosomal replication protein N prime prime No genes
RecA protein H281DRAFT_04208 -0.5
Recombination protein RecR H281DRAFT_00834 +0.2
Replicative DNA helicase (EC 3.6.1.-) H281DRAFT_00793 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) H281DRAFT_00488 +0.2
Transcription-repair coupling factor H281DRAFT_00880 -1.0

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