SEED Subsystem: D-ribose utilization in Sinorhizobium meliloti 1021

Experiments:

Role Gene Name Day4 LB  
⨯
Predicted nucleoside ABC transporter, ATP-binding component SM_b20124 +0.0
  SMc04127 +1.6
Predicted nucleoside ABC transporter, permease 1 component SMc04126 +1.6
Predicted nucleoside ABC transporter, permease 2 component SMc04125 +1.7
Predicted nucleoside ABC transporter, substrate-binding component SMc02884 +1.6
Predicted regulator of ribose utilization, LacI family No genes
Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5) No genes
Ribokinase (EC 2.7.1.15) SMc01103 -0.4
Ribose 5-phosphate isomerase A (EC 5.3.1.6) SMc00152 N.D.
Ribose 5-phosphate isomerase B (EC 5.3.1.6) SM_b20371 +0.2
  SMc01613 -0.9
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) SM_b20017 +0.1
  SM_b20317 -0.3
  SM_b20351 +0.1
  SM_b20485 +0.0
  SM_b20503 +0.0
  SM_b20507 +0.1
  SM_b20673 +0.0
  SM_b20855 +0.0
  SM_b21344 -0.1
  SMa0199 -0.1
  SMa1421 -0.1
  SMa1998 +0.0
  SMc02337 +0.2
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) No genes
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) SM_b20316 -0.1
  SM_b20349 +0.1
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) SM_b20125 -0.1
  SM_b20315 -0.0
  SM_b20318 +0.0
  SM_b20352 +0.1
  SM_b20486 -0.1
  SM_b20502 +0.0
  SM_b20621 +0.1
  SM_b20672 +0.1
  SM_b20854 +0.0
  SM_b20929 -0.0
  SM_b21342 +0.2
  SM_b21593 +0.0
  SMa0197 -0.1
  SMa0198 +0.2
  SMa0501 +0.1
  SMa0800 -0.0
  SMa1424 -0.1
  SMa1996 -0.1
  SMc01869 +0.0
  SMc02019 +0.0
  SMc02031 -0.0
  SMc02472 +0.1
  SMc03814 -0.1
Ribose operon repressor SM_b20230 -0.0
  SM_b20674 +0.0
  SM_b21372 +1.2
Ribose/xylose/arabinose/galactoside ABC-type transport systems, ATP-binding protein (EC 3.6.3.17) No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, periplasmic sugar binding protein No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 1 SM_b20487 -0.1
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 2 No genes

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