SEED Subsystem: DNA-replication in Enterobacter sp. TBS_079

Experiments:

Role Gene Name 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) MPMX20_00084 -1.1
ATP-dependent DNA helicase RecQ MPMX20_04458 -0.4
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA MPMX20_00001 N.D.
  MPMX20_03350 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) MPMX20_02768 -2.8
DNA polymerase I (EC 2.7.7.7) MPMX20_03668 +0.0
  MPMX20_04601 -0.0
DNA polymerase II (EC 2.7.7.7) MPMX20_00754 -0.0
DNA polymerase III alpha subunit (EC 2.7.7.7) MPMX20_00868 N.D.
DNA polymerase III beta subunit (EC 2.7.7.7) MPMX20_00002 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) MPMX20_04119 -0.1
DNA polymerase III delta prime subunit (EC 2.7.7.7) MPMX20_01779 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) MPMX20_01298 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) MPMX20_00900 N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) MPMX20_00670 N.D.
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) MPMX20_01072 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) MPMX20_02749 -0.4
  MPMX20_04733 -0.1
DNA primase (EC 2.7.7.-) MPMX20_03908 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN MPMX20_03486 +0.0
DNA replication protein DnaC MPMX20_00651 N.D.
  MPMX20_02910 +0.1
DNA replication terminus site-binding protein MPMX20_02023 -0.3
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) MPMX20_03682 -0.3
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) MPMX20_03683 -0.5
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) MPMX20_03685 -0.3
Helicase PriA essential for oriC/DnaA-independent DNA replication MPMX20_04534 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA MPMX20_02767 -2.5
Holliday junction DNA helicase RuvB MPMX20_02766 -0.1
Primosomal protein I MPMX20_00652 N.D.
Primosomal replication protein N MPMX20_00478 N.D.
Primosomal replication protein N prime prime MPMX20_01069 -0.1
RecA protein MPMX20_03580 -1.1
Recombination protein RecR MPMX20_01074 -0.3
Replicative DNA helicase (EC 3.6.1.-) MPMX20_00268 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) MPMX20_03751 -0.8
Transcription-repair coupling factor MPMX20_01795 +1.4

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