SEED Subsystem: Valine degradation in Lysobacter sp. OAE881

Experiments:

Role Gene Name Ying_all64 rep A; time point 3  
⨯
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) ABIE51_RS13895 +0.1
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) No genes
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) No genes
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) No genes
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) ABIE51_RS04045 +0.2
  ABIE51_RS12550 -1.1
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) ABIE51_RS04040 +0.1
  ABIE51_RS12550 -1.1
Branched-chain amino acid aminotransferase (EC 2.6.1.42) ABIE51_RS16505 -0.5
  ABIE51_RS17560 -0.2
Butyrate kinase (EC 2.7.2.7) No genes
Butyryl-CoA dehydrogenase (EC 1.3.99.2) ABIE51_RS09100 +0.3
  ABIE51_RS16325 +0.1
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) ABIE51_RS04030 +0.5
Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) No genes
Enoyl-CoA hydratase (EC 4.2.1.17) ABIE51_RS07570 N.D.
  ABIE51_RS07595 +1.2
  ABIE51_RS13895 +0.1
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) No genes
Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.-) No genes
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) No genes
Predicted transcriptional regulator of leucine degradation pathway, MerR family No genes
Probable acyl-CoA dehydrogenase (EC 1.3.99.3) No genes
Transcriptional regulator BkdR of isoleucine and valine catabolism operon No genes
phosphotransbutyrylase (EC 2.3.1.19) No genes

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