SEED Subsystem: Lysine degradation in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name Nickel (II) chloride 0.0025 M  
⨯
5-aminopentanamidase (EC 3.5.1.30) Pf6N2E2_4777 -0.3
5-aminovalerate aminotransferase (EC 2.6.1.48) Pf6N2E2_4013 -0.6
Beta-lysine acetyltransferase (EC 2.3.1.-) No genes
Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) Pf6N2E2_1089 -0.3
Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) No genes
L-aminoadipate-semialdehyde dehydrogenase large subunit (EC 1.2.1.31) No genes
L-beta-lysine 5,6-aminomutase alpha subunit (EC 5.4.3.3) No genes
L-beta-lysine 5,6-aminomutase beta subunit (EC 5.4.3.3) No genes
L-lysine aminomutase regulator No genes
L-lysine permease Pf6N2E2_2789 +0.1
  Pf6N2E2_3245 +0.3
  Pf6N2E2_5469 +0.3
L-pipecolate dehydrogenase (EC 1.5.99.3) Pf6N2E2_3582 +0.0
L-pipecolate oxidase (1.5.3.7) Pf6N2E2_3581 +0.1
Lysine 2,3-aminomutase (EC 5.4.3.2) Pf6N2E2_2163 +0.0
Lysine 2-monooxygenase (EC 1.13.12.2) Pf6N2E2_4778 -1.0
Lysine decarboxylase (EC 4.1.1.18) No genes
Lysine decarboxylase 2, constitutive (EC 4.1.1.18) No genes
Lysine decarboxylase, inducible (EC 4.1.1.18) No genes
Lysine ketoglutarate reductase (EC 1.5.1.8) (LOR) (LKR) No genes
Lysine/cadaverine antiporter membrane protein CadB No genes
Outer membrane porin, OprD family Pf6N2E2_1193 +0.2
  Pf6N2E2_1513 -0.2
  Pf6N2E2_3309 +0.3
  Pf6N2E2_3873 -1.1
  Pf6N2E2_4498 -0.0
  Pf6N2E2_5524 -0.1
Saccharopine dehydrogenase (EC 1.5.1.9) No genes
Saccharopine dehydrogenase [NAD+, L-lysine-forming] (EC 1.5.1.7) No genes
Saccharopine dehydrogenase [NADP , L-glutamate-forming] (EC 1.5.1.10) No genes
Transcriptional activator of cad operon No genes

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