SEED Subsystem: De Novo Purine Biosynthesis in Rhodanobacter denitrificans FW104-10B01

Experiments:

Role Gene Name D-Glucosamine Hydrochloride 20 mM  
⨯
Adenylosuccinate lyase (EC 4.3.2.2) LRK54_RS00890 N.D.
Amidophosphoribosyltransferase (EC 2.4.2.14) LRK54_RS01340 -3.8
IMP cyclohydrolase (EC 3.5.4.10) LRK54_RS06825 N.D.
IMP cyclohydrolase (EC 3.5.4.10) [alternate form] No genes
Phosphoribosylamine--glycine ligase (EC 6.3.4.13) LRK54_RS10165 -3.5
Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) LRK54_RS13815 N.D.
Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) LRK54_RS13810 N.D.
Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) LRK54_RS11375 -3.5
Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) LRK54_RS06825 N.D.
Phosphoribosylaminoimidazolecarboxamide formyltransferase [alternate form] No genes
Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) LRK54_RS12945 -3.1
Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) No genes
Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) LRK54_RS04720 -3.3
Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) LRK54_RS04720 -3.3
Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) LRK54_RS12940 -0.2
Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) LRK54_RS14545 +1.2
Possible subunit variant of phosphoribosylaminoimidazolecarboxamide formyltransferase [alternate form] No genes
Possible third subunit-variant of phosphoribosylaminoimidazolecarboxamide formyltransferase [alternate form] No genes
PurR: transcription regulator associated with purine metabolism No genes
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) LRK54_RS01960 -0.2
  LRK54_RS03690 N.D.
YabJ, a purine regulatory protein and member of the highly conserved YjgF family No genes

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