SEED Subsystem: Valine degradation in Rhodanobacter denitrificans FW104-10B01

Experiments:

Role Gene Name acetate 20 mM  
⨯
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) LRK54_RS00055 -1.0
  LRK54_RS16925 -0.4
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) No genes
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) No genes
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) No genes
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) LRK54_RS02050 -0.1
  LRK54_RS05875 N.D.
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) LRK54_RS02050 -0.1
  LRK54_RS05880 N.D.
Branched-chain amino acid aminotransferase (EC 2.6.1.42) LRK54_RS10340 -2.8
  LRK54_RS12020 -0.0
Butyrate kinase (EC 2.7.2.7) No genes
Butyryl-CoA dehydrogenase (EC 1.3.99.2) LRK54_RS02105 +0.0
  LRK54_RS05405 -0.2
  LRK54_RS15685 +0.2
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) LRK54_RS05885 N.D.
Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) No genes
Enoyl-CoA hydratase (EC 4.2.1.17) LRK54_RS00055 -1.0
  LRK54_RS15165 -1.4
  LRK54_RS15185 +0.1
  LRK54_RS16925 -0.4
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) No genes
Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.-) No genes
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) No genes
Predicted transcriptional regulator of leucine degradation pathway, MerR family No genes
Probable acyl-CoA dehydrogenase (EC 1.3.99.3) No genes
Transcriptional regulator BkdR of isoleucine and valine catabolism operon No genes
phosphotransbutyrylase (EC 2.3.1.19) No genes

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