SEED Subsystem: Serine-glyoxylate cycle in Pseudomonas fluorescens FW300-N2C3

Experiments:

Role Gene Name L-Leucine (C)  
3-ketoacyl-CoA thiolase (EC 2.3.1.16) AO356_03560 -0.1
  AO356_26350 -0.0
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) AO356_13605 -2.6
5-FCL-like protein, but predicted not to be 5-formyltetrahydrofolate cyclo-ligase (5-FCL) No genes
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) AO356_12990 -0.4
Acetoacetyl-CoA reductase (EC 1.1.1.36) No genes
Acetyl-CoA acetyltransferase (EC 2.3.1.9) No genes
Aconitate hydratase (EC 4.2.1.3) AO356_02385 -0.1
Citrate synthase (EC 2.3.3.1) No genes
Citrate synthase (si) (EC 2.3.3.1) AO356_19670 N.D.
Enolase (EC 4.2.1.11) AO356_05940 N.D.
Formate--tetrahydrofolate ligase (EC 6.3.4.3) No genes
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) AO356_17810 N.D.
Fumarate hydratase class I, anaerobic (EC 4.2.1.2) No genes
GDSL-like lipase/acylhydrolase No genes
Glycerate kinase (EC 2.7.1.31) AO356_18000 -0.1
  AO356_22870 +0.1
Isocitrate lyase (EC 4.1.3.1) AO356_22080 -5.6
Malate dehydrogenase (EC 1.1.1.37) No genes
Malate synthase-related protein No genes
Malyl-CoA lyase (EC 4.1.3.24) No genes
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) AO356_01775 N.D.
  AO356_30060 -0.4
  AO356_30100 -0.2
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) AO356_01595 -4.7
  AO356_02930 -0.4
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) AO356_01585 -4.3
  AO356_02920 -0.0
Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.99.9) No genes
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) AO356_01775 N.D.
  AO356_30060 -0.4
  AO356_30100 -0.2
Methylmalonyl-CoA mutase (EC 5.4.99.2) No genes
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27) No genes
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) AO356_10140 +0.3
Phosphoglyceromutase No genes
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) No genes
Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) AO356_13970 -0.3
  AO356_15725 N.D.
  AO356_16850 +0.1
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes
Serine--pyruvate aminotransferase (EC 2.6.1.51) No genes
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) AO356_19685 N.D.
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) AO356_19690 N.D.
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) AO356_19715 N.D.
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) AO356_19710 N.D.
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) AO356_21650 -1.0
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) AO356_21645 -1.4
crotonyl-CoA reductase No genes
cytosolic long-chain acyl-CoA thioester hydrolase family protein AO356_11055 -0.7
  AO356_11970 +0.0
  AO356_13615 -0.3
decarboxylase AO356_05660 +0.1
isobutyryl-CoA dehydrogenase No genes
low-specificity D-threonine aldolase AO356_26790 -0.6
polyhydroxyalkanoate synthesis repressor PhaR No genes
putative glycerate kinase No genes
putative isobutyryl-CoA mutase, chain B No genes

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