SEED Subsystem: Arginine and Ornithine Degradation in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name Hydroxylamine 0.5 M  
Agmatinase (EC 3.5.3.11) Pf6N2E2_2655 -0.1
Agmatine deiminase (EC 3.5.3.12) Pf6N2E2_3876 -2.6
Arginase (EC 3.5.3.1) No genes
Arginine ABC transporter, ATP-binding protein ArtP No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtI No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtJ Pf6N2E2_1756 +0.3
Arginine ABC transporter, permease protein ArtM No genes
Arginine ABC transporter, permease protein ArtQ Pf6N2E2_3857 +0.8
Arginine N-succinyltransferase (EC 2.3.1.109) Pf6N2E2_2181 +0.9
  Pf6N2E2_5667 +0.7
Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) Pf6N2E2_2180 +1.5
  Pf6N2E2_5666 +0.0
Arginine N-succinyltransferase, beta subunit (EC 2.3.1.109) No genes
Arginine decarboxylase (EC 4.1.1.19) Pf6N2E2_3334 -0.1
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine deiminase (EC 3.5.3.6) Pf6N2E2_2908 -0.1
Arginine pathway regulatory protein ArgR, repressor of arg regulon Pf6N2E2_5664 +1.2
Arginine permease RocE No genes
Arginine utilization protein RocB No genes
Arginine utilization regulatory protein RocR No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine ABC transporter, ATP-binding protein AotP Pf6N2E2_5663 +1.2
Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein Pf6N2E2_1098 -0.5
  Pf6N2E2_5395 +0.0
  Pf6N2E2_5660 +1.6
Arginine/ornithine ABC transporter, permease protein AotM Pf6N2E2_5662 +1.9
Arginine/ornithine ABC transporter, permease protein AotQ Pf6N2E2_5661 +1.8
Arginine/ornithine antiporter ArcD Pf6N2E2_1517 +0.1
  Pf6N2E2_2906 +0.1
  Pf6N2E2_2907 -0.1
Biosynthetic arginine decarboxylase (EC 4.1.1.19) Pf6N2E2_3504 -1.5
Carbamate kinase (EC 2.7.2.2) Pf6N2E2_2910 +0.0
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) Pf6N2E2_3685 +0.1
Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) Pf6N2E2_2962 +0.5
  Pf6N2E2_3855 +1.1
Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) No genes
Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) Pf6N2E2_2960 +0.1
Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) Pf6N2E2_2959 +0.0
Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) Pf6N2E2_2958 +0.1
  Pf6N2E2_3856 +1.9
  Pf6N2E2_4282 +0.1
N-carbamoylputrescine amidase (3.5.1.53) No genes
NADP-specific glutamate dehydrogenase (EC 1.4.1.4) No genes
Ornithine aminotransferase (EC 2.6.1.13) No genes
Ornithine carbamoyltransferase (EC 2.1.3.3) Pf6N2E2_2909 -0.1
  Pf6N2E2_5579 +0.2
Ornithine cyclodeaminase (EC 4.3.1.12) Pf6N2E2_3317 +0.3
  Pf6N2E2_3321 +0.0
  Pf6N2E2_5398 N.D.
  Pf6N2E2_5399 +0.1
Ornithine decarboxylase (EC 4.1.1.17) Pf6N2E2_3334 -0.1
Putrescine aminotransferase (EC 2.6.1.82) No genes
Succinylarginine dihydrolase (EC 3.5.3.23) Pf6N2E2_5669 -0.7
Succinylglutamate desuccinylase (EC 3.5.1.96) Pf6N2E2_5671 -2.5
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Pf6N2E2_5668 -0.3
Succinylornithine transaminase (EC 2.6.1.81) Pf6N2E2_5665 +0.6
Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family No genes
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes

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