SEED Subsystem: Lysine degradation in Pseudomonas fluorescens FW300-N2E3

Experiments:

Role Gene Name Putrescine (N)  
⨯
5-aminopentanamidase (EC 3.5.1.30) AO353_07425 -0.1
5-aminovalerate aminotransferase (EC 2.6.1.48) AO353_11510 -1.2
Beta-lysine acetyltransferase (EC 2.3.1.-) No genes
Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) AO353_23830 -0.1
Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) No genes
L-aminoadipate-semialdehyde dehydrogenase large subunit (EC 1.2.1.31) No genes
L-beta-lysine 5,6-aminomutase alpha subunit (EC 5.4.3.3) No genes
L-beta-lysine 5,6-aminomutase beta subunit (EC 5.4.3.3) No genes
L-lysine aminomutase regulator No genes
L-lysine permease AO353_10200 -0.2
  AO353_14645 -0.1
  AO353_15005 +0.1
  AO353_16200 +0.1
L-pipecolate dehydrogenase (EC 1.5.99.3) AO353_13330 -0.1
L-pipecolate oxidase (1.5.3.7) AO353_13335 -0.1
Lysine 2,3-aminomutase (EC 5.4.3.2) No genes
Lysine 2-monooxygenase (EC 1.13.12.2) AO353_07420 -0.2
Lysine decarboxylase (EC 4.1.1.18) No genes
Lysine decarboxylase 2, constitutive (EC 4.1.1.18) No genes
Lysine decarboxylase, inducible (EC 4.1.1.18) AO353_23560 -0.2
Lysine ketoglutarate reductase (EC 1.5.1.8) (LOR) (LKR) No genes
Lysine/cadaverine antiporter membrane protein CadB No genes
Outer membrane porin, OprD family AO353_03630 -0.4
  AO353_05385 -0.1
  AO353_08680 +0.1
  AO353_11935 -0.2
  AO353_15105 -0.0
Saccharopine dehydrogenase (EC 1.5.1.9) No genes
Saccharopine dehydrogenase [NAD+, L-lysine-forming] (EC 1.5.1.7) No genes
Saccharopine dehydrogenase [NADP , L-glutamate-forming] (EC 1.5.1.10) No genes
Transcriptional activator of cad operon No genes

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