SEED Subsystem: Ribosome biogenesis bacterial in Pseudomonas fluorescens SBW25-INTG

Experiments:

Role Gene Name NAG (C)  
⨯
16S rRNA processing protein RimM PFLU_RS24575 N.D.
Dimethyladenosine transferase (EC 2.1.1.-) No genes
Inactive homolog of metal-dependent proteases, putative molecular chaperone No genes
LSU m3Psi1915 methyltransferase RlmH PFLU_RS26660 +1.1
LSU m5C1962 methyltransferase RlmI PFLU_RS28525 -0.3
RNA pseudouridylate synthase, group 1 No genes
Ribonuclease E (EC 3.1.26.12) PFLU_RS23100 +0.5
Ribonuclease M5 (EC 3.1.26.8) No genes
Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) PFLU_RS21445 -0.5
Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) PFLU_RS23095 -2.0
Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) PFLU_RS03870 +0.4
Ribosomal protein L11 methyltransferase (EC 2.1.1.-) PFLU_RS03035 +0.5
Ribosomal protein S6 glutaminyl transferase PFLU_RS01290 -0.9
  PFLU_RS27775 -0.2
Ribosomal-protein-L7p-serine acetyltransferase No genes
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) PFLU_RS03395 -0.6
Ribosomal-protein-S5p-alanine acetyltransferase No genes
Similar to ribosomal large subunit pseudouridine synthase A PFLU_RS08610 -0.3
Similar to ribosomal large subunit pseudouridine synthase A, group 2 No genes
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YhcT type No genes
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type No genes
Similar to ribosomal large subunit pseudouridine synthase D, CAC1266-type No genes
Similar to ribosomal large subunit pseudouridine synthase D, TTE1780-type No genes
hypothetical protein sometimes fused to ribosomal protein S6 glutaminyl transferase PFLU_RS01295 -0.0
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) PFLU_RS24570 N.D.

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