SEED Subsystem: DNA-replication in Bifidobacterium breve UCC2003

Experiments:

Role Gene Name Recovery broth with nitrite 0.5 mM  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) BBR_RS19295 -0.2
ATP-dependent DNA helicase RecQ BBR_RS13150 +0.1
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA BBR_RS10255 -3.0
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) BBR_RS15650 -1.2
DNA polymerase I (EC 2.7.7.7) BBR_RS14315 -0.6
DNA polymerase II (EC 2.7.7.7) No genes
DNA polymerase III alpha subunit (EC 2.7.7.7) BBR_RS17125 N.D.
DNA polymerase III beta subunit (EC 2.7.7.7) BBR_RS10260 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) No genes
DNA polymerase III delta prime subunit (EC 2.7.7.7) BBR_RS11195 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) BBR_RS16260 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) BBR_RS13650 -0.4
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) BBR_RS10985 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) BBR_RS13180 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN BBR_RS14030 -0.1
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication BBR_RS17620 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA BBR_RS15655 -0.9
Holliday junction DNA helicase RuvB BBR_RS15660 -0.6
Primosomal protein I No genes
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein BBR_RS16530 +0.3
Recombination protein RecR BBR_RS10990 +0.3
Replicative DNA helicase (EC 3.6.1.-) BBR_RS11535 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) No genes
Transcription-repair coupling factor BBR_RS14115 -1.5

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