SEED Subsystem: Arginine and Ornithine Degradation in Pseudomonas fluorescens FW300-N2E3

Experiments:

Role Gene Name L-Citrulline (C)  
Agmatinase (EC 3.5.3.11) AO353_18400 -0.5
Agmatine deiminase (EC 3.5.3.12) AO353_11915 +0.4
  AO353_28700 +0.4
  AO353_28730 +0.1
  AO353_28745 -0.1
Arginase (EC 3.5.3.1) No genes
Arginine ABC transporter, ATP-binding protein ArtP No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtI No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtJ AO353_06030 +0.1
Arginine ABC transporter, permease protein ArtM No genes
Arginine ABC transporter, permease protein ArtQ AO353_11990 -0.1
Arginine N-succinyltransferase (EC 2.3.1.109) AO353_03015 -3.2
  AO353_25630 -4.4
  AO353_27920 -0.1
Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) AO353_03020 -0.4
  AO353_27915 +0.2
Arginine N-succinyltransferase, beta subunit (EC 2.3.1.109) No genes
Arginine decarboxylase (EC 4.1.1.19) AO353_05445 +0.0
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine deiminase (EC 3.5.3.6) AO353_03470 -0.2
Arginine pathway regulatory protein ArgR, repressor of arg regulon AO353_03035 -4.3
Arginine permease RocE AO353_24825 -0.2
Arginine utilization protein RocB No genes
Arginine utilization regulatory protein RocR No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine ABC transporter, ATP-binding protein AotP AO353_03040 -1.4
  AO353_14675 -0.1
  AO353_27990 -0.2
Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein AO353_03055 -2.4
  AO353_04645 +0.3
  AO353_27970 -0.0
Arginine/ornithine ABC transporter, permease protein AotM AO353_03045 -1.2
Arginine/ornithine ABC transporter, permease protein AotQ AO353_03050 -1.0
  AO353_27975 -0.1
Arginine/ornithine antiporter ArcD AO353_03465 +0.0
  AO353_20050 -0.0
Biosynthetic arginine decarboxylase (EC 4.1.1.19) AO353_13720 +0.1
Carbamate kinase (EC 2.7.2.2) AO353_03480 +0.1
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) AO353_12810 -0.9
Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) AO353_01525 N.D.
  AO353_12000 -0.1
  AO353_16950 N.D.
  AO353_17705 -0.1
  AO353_25645 -3.4
Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) No genes
Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) AO353_01530 -0.1
  AO353_16960 +0.2
  AO353_25650 -0.1
Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) AO353_01535 +0.2
  AO353_16965 +0.4
  AO353_17715 -0.2
  AO353_25655 -1.0
  AO353_28140 -0.0
Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) AO353_01540 +0.1
  AO353_10015 +0.0
  AO353_11995 -0.0
  AO353_12320 +0.5
  AO353_16970 +0.3
  AO353_25660 -0.3
  AO353_28145 -0.3
  AO353_28165 -0.1
  AO353_29015 -0.0
N-carbamoylputrescine amidase (3.5.1.53) AO353_11910 +0.4
  AO353_28740 +0.2
NADP-specific glutamate dehydrogenase (EC 1.4.1.4) No genes
Ornithine aminotransferase (EC 2.6.1.13) No genes
Ornithine carbamoyltransferase (EC 2.1.3.3) AO353_03475 +0.1
  AO353_04155 +0.0
Ornithine cyclodeaminase (EC 4.3.1.12) AO353_04630 +0.0
  AO353_25185 +1.0
Ornithine decarboxylase (EC 4.1.1.17) AO353_05445 +0.0
Putrescine aminotransferase (EC 2.6.1.82) AO353_17760 -0.2
Succinylarginine dihydrolase (EC 3.5.3.23) AO353_03005 -4.3
Succinylglutamate desuccinylase (EC 3.5.1.96) AO353_02995 -4.6
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) AO353_03010 -3.5
Succinylornithine transaminase (EC 2.6.1.81) AO353_03025 -4.3
Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family No genes
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes

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