SEED Subsystem: Arginine and Ornithine Degradation in Pseudomonas stutzeri RCH2

Experiments:

Role Gene Name Benzalkonium Chloride 0.002 mg/ml  
Agmatinase (EC 3.5.3.11) No genes
Agmatine deiminase (EC 3.5.3.12) Psest_4291 +0.1
Arginase (EC 3.5.3.1) No genes
Arginine ABC transporter, ATP-binding protein ArtP No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtI No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtJ No genes
Arginine ABC transporter, permease protein ArtM No genes
Arginine ABC transporter, permease protein ArtQ Psest_0137 +0.1
Arginine N-succinyltransferase (EC 2.3.1.109) No genes
Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) No genes
Arginine N-succinyltransferase, beta subunit (EC 2.3.1.109) No genes
Arginine decarboxylase (EC 4.1.1.19) Psest_3350 +0.4
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine deiminase (EC 3.5.3.6) Psest_0272 -0.3
Arginine pathway regulatory protein ArgR, repressor of arg regulon No genes
Arginine permease RocE No genes
Arginine utilization protein RocB No genes
Arginine utilization regulatory protein RocR No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine ABC transporter, ATP-binding protein AotP No genes
Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein No genes
Arginine/ornithine ABC transporter, permease protein AotM No genes
Arginine/ornithine ABC transporter, permease protein AotQ No genes
Arginine/ornithine antiporter ArcD Psest_0230 +1.1
  Psest_0273 -0.5
  Psest_2808 N.D.
Biosynthetic arginine decarboxylase (EC 4.1.1.19) Psest_3366 +0.0
Carbamate kinase (EC 2.7.2.2) Psest_0270 +0.4
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) Psest_3079 -0.3
Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) Psest_0139 -0.2
Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) No genes
Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) No genes
Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) No genes
Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) Psest_0138 -0.4
N-carbamoylputrescine amidase (3.5.1.53) Psest_4290 -0.8
NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Psest_3438 +0.1
Ornithine aminotransferase (EC 2.6.1.13) No genes
Ornithine carbamoyltransferase (EC 2.1.3.3) Psest_1291 N.D.
  Psest_0271 +0.1
Ornithine cyclodeaminase (EC 4.3.1.12) No genes
Ornithine decarboxylase (EC 4.1.1.17) Psest_3350 +0.4
Putrescine aminotransferase (EC 2.6.1.82) No genes
Succinylarginine dihydrolase (EC 3.5.3.23) No genes
Succinylglutamate desuccinylase (EC 3.5.1.96) Psest_2717 +0.1
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) No genes
Succinylornithine transaminase (EC 2.6.1.81) Psest_2719 +0.9
Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family No genes
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes

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