SEED Subsystem: Benzoate transport and degradation cluster in Rhodopseudomonas palustris CGA009

Experiments:

Role Gene Name PM with 4-Hydroxybenzoic Acid (C)  
⨯
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) TX73_017820 -0.0
  TX73_022935 +0.1
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-) TX73_019460 -0.2
3-hydroxyacyl-CoA dehydrogenase (PaaH) (EC 1.1.1.157) No genes
4-hydroxybenzoyl-CoA reductase, beta subunit (EC 1.3.99.20) No genes
4-hydroxybenzoyl-CoA reductase, gamma subunit (EC 1.3.99.20) No genes
4-oxalocrotonate decarboxylase (EC 4.1.1.77) No genes
Benzoate transport related protein No genes
Benzoate transport, ATP binding protein TX73_003445 -0.3
Benzoate transport, ATPase component TX73_003450 -0.2
  TX73_011770 -0.1
  TX73_020860 +0.1
  TX73_022800 +0.2
Benzoate transport, extracellular ligand-binding receptor TX73_003460 -0.2
  TX73_022795 +0.1
Benzoate transport, inner membrane transport component TX73_003450 -0.2
Benzoate transport, inner-membrane translocator TX73_003455 +0.3
Benzoate transport, inner-membrane translocator precursor No genes
Benzoate-CoA ligase (EC 6.2.1.25) TX73_003425 -3.1
  TX73_003465 -0.3
Benzoyl-CoA oxygenase component A No genes
Benzoyl-CoA oxygenase component B TX73_003505 +0.0
Beta-ketoadipyl CoA thiolase (EC 2.3.1.9) No genes
Hydroxybenzoyl-CoA reductase subunit No genes
Methylglutaconyl-CoA hydratase (EC 4.2.1.18) TX73_011065 -0.3
P-hydroxylaminobenzoate lyase No genes
Predicted 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase No genes
Putative Acyl-CoA thiolase No genes
Regulatory protein of benzoate catabolism TX73_024880 +1.5
Shikimate kinase I (EC 2.7.1.71) TX73_002615 N.D.
Shikimate kinase II (EC 2.7.1.71) No genes
benzoate degradation ring-cleavage hydrolase TX73_003495 +0.1
benzoyl-CoA-dihydrodiol lyase (BoxC) No genes
hydroxybenzoate permease No genes

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