SEED Subsystem: DNA-replication in Lysobacter sp. OAE881

Experiments:

Role Gene Name Ying_sugar7 rep C; time point 2  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) ABIE51_RS17230 -1.6
ATP-dependent DNA helicase RecQ ABIE51_RS05145 +0.2
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA ABIE51_RS00755 N.D.
  ABIE51_RS15875 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) ABIE51_RS05040 N.D.
DNA polymerase I (EC 2.7.7.7) ABIE51_RS02010 +0.2
  ABIE51_RS05515 -0.1
DNA polymerase II (EC 2.7.7.7) No genes
DNA polymerase III alpha subunit (EC 2.7.7.7) ABIE51_RS06845 N.D.
  ABIE51_RS11850 +0.0
DNA polymerase III beta subunit (EC 2.7.7.7) ABIE51_RS00760 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) ABIE51_RS04470 N.D.
DNA polymerase III delta prime subunit (EC 2.7.7.7) ABIE51_RS13910 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) ABIE51_RS06735 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) ABIE51_RS14095 N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) ABIE51_RS14020 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) ABIE51_RS19140 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN ABIE51_RS11655 -1.2
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) ABIE51_RS01030 -0.5
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) ABIE51_RS01025 -2.0
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) ABIE51_RS01020 -1.8
Helicase PriA essential for oriC/DnaA-independent DNA replication ABIE51_RS02145 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA ABIE51_RS05045 -3.4
Holliday junction DNA helicase RuvB ABIE51_RS05055 N.D.
Primosomal protein I ABIE51_RS07160 -0.4
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein ABIE51_RS07800 -1.1
Recombination protein RecR ABIE51_RS14010 -0.0
Replicative DNA helicase (EC 3.6.1.-) ABIE51_RS07165 +0.0
  ABIE51_RS09240 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) No genes
Transcription-repair coupling factor ABIE51_RS14320 -0.7

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