SEED Subsystem: Photorespiration (oxidative C2 cycle) in Pseudomonas fluorescens FW300-N1B4

Experiments:

Role Gene Name Carnitine Hydrochloride (N)  
⨯
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) Pf1N1B4_1220 +0.3
  Pf1N1B4_3659 N.D.
2-oxoglutarate/malate translocator No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Pf1N1B4_2234 -0.2
  Pf1N1B4_623 -0.2
Catalase (EC 1.11.1.6) Pf1N1B4_2609 -0.1
  Pf1N1B4_2766 +0.2
  Pf1N1B4_3732 -0.4
  Pf1N1B4_3978 -0.1
  Pf1N1B4_4230 -0.0
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) No genes
D-glycerate 3-kinase (EC 2.7.1.31), plant type No genes
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) Pf1N1B4_1976 -0.1
Expressed protein possibly involved in photorespiration No genes
Glycerate kinase (EC 2.7.1.31) Pf1N1B4_3425 -0.2
  Pf1N1B4_4998 N.D.
  Pf1N1B4_642 -0.1
Glycine cleavage system H protein Pf1N1B4_2235 +0.0
  Pf1N1B4_620 +0.2
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Pf1N1B4_2236 -0.2
  Pf1N1B4_621 -0.3
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE Pf1N1B4_5863 -0.5
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF Pf1N1B4_5864 -1.8
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Pf1N1B4_4228 N.D.
  Pf1N1B4_4229 +0.1
  Pf1N1B4_5862 +0.4
Glycolate oxidase (EC 1.1.3.15) No genes
Glycolate permease No genes
Glyoxylate carboligase (EC 4.1.1.47) Pf1N1B4_3661 -0.3
Hydroxypyruvate reductase (EC 1.1.1.81) No genes
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) No genes
Malate synthase (EC 2.3.3.9) No genes
Malate synthase G (EC 2.3.3.9) Pf1N1B4_2478 -0.1
Malyl-CoA lyase (EC 4.1.3.24) No genes
Phosphoglycolate phosphatase (EC 3.1.3.18) Pf1N1B4_1842 -0.1
  Pf1N1B4_2544 +0.3
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) Pf1N1B4_2161 +0.1
  Pf1N1B4_2454 -2.2
  Pf1N1B4_2778 N.D.
  Pf1N1B4_2779 +0.2
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes

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