SEED Subsystem: Glycine and Serine Utilization in Pseudomonas fluorescens FW300-N1B4

Experiments:

Role Gene Name Carnitine Hydrochloride (N)  
⨯
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Pf1N1B4_2234 -0.2
  Pf1N1B4_623 -0.2
Cystathionine beta-synthase (EC 4.2.1.22) Pf1N1B4_4889 +0.2
Cystathionine gamma-lyase (EC 4.4.1.1) Pf1N1B4_4890 -0.1
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Pf1N1B4_181 N.D.
  Pf1N1B4_2272 -2.4
  Pf1N1B4_2954 -0.1
  Pf1N1B4_3347 +0.1
  Pf1N1B4_4545 N.D.
  Pf1N1B4_4688 -0.0
  Pf1N1B4_4909 N.D.
D-serine dehydratase (EC 4.3.1.18) No genes
D-serine dehydratase transcriptional activator No genes
D-serine permease DsdX No genes
D-serine/D-alanine/glycine transporter Pf1N1B4_4976 +0.1
  Pf1N1B4_801 +0.0
Glycerate kinase (EC 2.7.1.31) Pf1N1B4_3425 -0.2
  Pf1N1B4_4998 N.D.
  Pf1N1B4_642 -0.1
Glycine cleavage system H protein Pf1N1B4_2235 +0.0
  Pf1N1B4_620 +0.2
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Pf1N1B4_2236 -0.2
  Pf1N1B4_621 -0.3
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
L-serine dehydratase (EC 4.3.1.17) Pf1N1B4_1013 -0.1
  Pf1N1B4_2423 -0.2
  Pf1N1B4_622 -0.0
L-serine dehydratase 1 (EC 4.3.1.17) No genes
L-serine dehydratase, alpha subunit (EC 4.3.1.17) No genes
L-serine dehydratase, beta subunit (EC 4.3.1.17) No genes
Monoamine oxidase (1.4.3.4) No genes
Phosphoserine aminotransferase (EC 2.6.1.52) Pf1N1B4_351 N.D.
  Pf1N1B4_352 N.D.
Phosphoserine phosphatase (EC 3.1.3.3) Pf1N1B4_1434 -2.6
  Pf1N1B4_2282 -2.8
  Pf1N1B4_2302 -0.0
  Pf1N1B4_3743 +0.0
Serine hydroxymethyltransferase (EC 2.1.2.1) Pf1N1B4_2161 +0.1
  Pf1N1B4_2454 -2.2
  Pf1N1B4_2778 N.D.
  Pf1N1B4_2779 +0.2
Serine transporter Pf1N1B4_1014 +0.3
  Pf1N1B4_4562 N.D.
Seryl-tRNA synthetase (EC 6.1.1.11) Pf1N1B4_4064 N.D.
Threonine dehydratase, catabolic (EC 4.3.1.19) No genes

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