SEED Subsystem: Bacterial RNA-metabolizing Zn-dependent hydrolases in Cupriavidus basilensis FW507-4G11

Experiments:

Role Gene Name R2A with Nickel (II) chloride 0.35 mM  
⨯
Cell division protein FtsK RR42_RS04320 -1.1
  RR42_RS08080 -0.1
  RR42_RS10850 -0.5
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) RR42_RS25830 +0.1
  RR42_RS26070 -0.2
Ferric uptake regulation protein FUR RR42_RS17560 +1.3
  RR42_RS37270 +1.5
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inactive homolog of metal-dependent proteases, putative molecular chaperone No genes
Metallo-beta-lactamase family protein, RNA-specific RR42_RS09610 +0.1
Peptide deformylase (EC 3.5.1.88) RR42_RS11900 +0.0
  RR42_RS20470 N.D.
Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) RR42_RS05485 +2.0
Protein of unknown function DUF1447 No genes
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) RR42_RS12055 -0.1
Transcriptional regulator in cluster with Zn-dependent hydrolase No genes
Trk system potassium uptake protein TrkA RR42_RS05725 -0.5
YgjD/Kae1/Qri7 family, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA No genes
Zn-dependent hydrolase, RNA-metabolising No genes
Zn-dependent hydrolase, RNA-metabolising, CPSF 100 kDa analog No genes
Zn-dependent hydrolase, RNA-metabolising, CPSF 73 kDa analog No genes
cytochrome d ubiquinol oxidase, subunit II-related protein No genes

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