SEED Subsystem: tRNA processing in Rhodanobacter denitrificans FW104-10B01

Experiments:

Role Gene Name R2A with beryllium sulfate tetrahydrate 1.953125 mM  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) LRK54_RS03740 -0.2
Ribonuclease D (EC 3.1.26.3) LRK54_RS16010 +0.0
Ribonuclease P protein component (EC 3.1.26.5) LRK54_RS08495 N.D.
Ribonuclease PH (EC 2.7.7.56) LRK54_RS11745 +0.5
Ribonuclease T (EC 3.1.13.-) LRK54_RS00450 -1.4
Ribonuclease Z (EC 3.1.26.11) No genes
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) LRK54_RS16640 +0.3
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) LRK54_RS01700 +0.9
  LRK54_RS07025 -0.2
  LRK54_RS15885 -0.2
tRNA pseudouridine synthase B (EC 4.2.1.70) LRK54_RS01035 +1.2
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase LRK54_RS13750 -0.8
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) LRK54_RS00115 N.D.
tRNAHis-5'-guanylyltransferase No genes

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