SEED Subsystem: DNA repair, bacterial in Pseudomonas fluorescens FW300-N2C3

Experiments:

Role Gene Name methylglyoxal 0.016 vol%  
⨯
A/G-specific adenine glycosylase (EC 3.2.2.-) AO356_09825 -0.1
  AO356_09830 -0.1
ADA regulatory protein AO356_22755 -0.1
  AO356_24420 -0.6
Alkylated DNA repair protein AlkB AO356_22760 -0.6
DNA mismatch repair endonuclease MutH No genes
DNA polymerase IV (EC 2.7.7.7) AO356_05570 +0.0
DNA polymerase-like protein MT3142 No genes
DNA polymerase-like protein PA0670 AO356_21815 +0.2
DNA recombination protein RmuC AO356_19220 -0.5
DNA recombination-dependent growth factor C AO356_19265 -1.2
DNA repair exonuclease family protein YhaO No genes
DNA repair protein RadA AO356_15680 -5.8
DNA repair protein RadC AO356_12545 -0.3
DNA repair protein RecN AO356_07510 -3.4
DNA-damage-inducible protein I No genes
DNA-damage-inducible protein J No genes
Endonuclease IV (EC 3.1.21.2) No genes
Endonuclease V (EC 3.1.21.7) No genes
Exodeoxyribonuclease III (EC 3.1.11.2) AO356_01060 -0.8
  AO356_01850 -0.1
  AO356_12515 -3.6
Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) AO356_06540 +0.1
Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) AO356_15000 N.D.
Exonuclease SbcC AO356_24625 +0.2
Exonuclease SbcD AO356_24630 +0.4
G:T/U mismatch-specific uracil/thymine DNA-glycosylase No genes
Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) No genes
Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) AO356_06890 -1.0
  AO356_22755 -0.1
  AO356_24420 -0.6
RecA protein AO356_05670 -3.8
Recombinational DNA repair protein RecT (prophage associated) No genes
SOS-response repressor and protease LexA (EC 3.4.21.88) AO356_02295 N.D.
  AO356_21805 -0.3
Single-stranded DNA-binding protein AO356_14795 N.D.
Very-short-patch mismatch repair endonuclease (G-T specific) No genes

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