SEED Subsystem: DNA Repair Base Excision in Pseudomonas fluorescens FW300-N2C3

Experiments:

Role Gene Name methylglyoxal 0.016 vol%  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC AO356_05490 +0.1
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD AO356_26950 -0.0
  AO356_27730 -0.2
DNA ligase (EC 6.5.1.2) AO356_02540 N.D.
  AO356_13660 -0.2
DNA polymerase I (EC 2.7.7.7) AO356_11465 -3.1
DNA polymerase II (EC 2.7.7.7) AO356_01325 +0.0
DNA-3-methyladenine glycosylase (EC 3.2.2.20) AO356_11590 -0.2
  AO356_19005 -0.5
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) AO356_15285 -0.1
  AO356_24415 +0.1
Endonuclease III (EC 4.2.99.18) AO356_18345 -0.3
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) AO356_17885 +0.1
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) AO356_13270 +0.1
Ku domain protein AO356_27725 +0.3
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) AO356_06345 +1.7
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 AO356_04635 -0.1

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