SEED Subsystem: Queuosine-Archaeosine Biosynthesis in Rhodanobacter denitrificans FW104-10B01

Experiments:

Role Gene Name R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM  
⨯
COG2047: Uncharacterized protein (ATP-grasp superfamily) No genes
Dihydroneopterin triphosphate pyrophosphohydolase No genes
Dihydroneopterin triphosphate pyrophosphohydolase type 2 No genes
GTP cyclohydrolase I (EC 3.5.4.16) type 1 LRK54_RS06940 N.D.
  LRK54_RS07900 +0.1
GTP cyclohydrolase I (EC 3.5.4.16) type 2 LRK54_RS02450 N.D.
Glutamine amidotransferases class-II (GATase) No genes
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) LRK54_RS11810 +0.5
NADPH dependent preQ0 reductase No genes
NADPH dependent preQ0 reductase-like No genes
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) LRK54_RS00740 +0.5
Peptidyl-prolyl cis-trans isomerase ppiB (EC 5.2.1.8) No genes
Permease of the drug/metabolite transporter (DMT) superfamily LRK54_RS01900 -0.1
  LRK54_RS04705 -0.0
  LRK54_RS06780 -0.2
  LRK54_RS10220 +0.4
  LRK54_RS10745 -0.0
  LRK54_RS11955 -1.0
Putative preQ0 transporter No genes
Queuosine Biosynthesis QueC ATPase LRK54_RS04855 +0.3
Queuosine Biosynthesis QueE Radical SAM LRK54_RS04860 +0.2
Queuosine biosynthesis QueD, PTPS-I No genes
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB LRK54_RS11735 -0.5
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) LRK54_RS03135 -0.0
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter No genes
Substrate-specific component STY3230 of queuosine-regulated ECF transporter No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5 No genes
glutamyl-Q-tRNA synthetase LRK54_RS14820 +0.3
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) No genes
tRNA-guanine transglycosylase (EC 2.4.2.29) LRK54_RS03130 +0.9

Or select organism:

Or view this subsystem at the SEED (slow)