SEED Subsystem: Nitrate and nitrite ammonification in Pantoea sp. MT58

Experiments:

Role Gene Name nitrogen source nitrate 20mM  
⨯
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) IAI47_11165 -1.9
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly No genes
Cytochrome c-type protein NapC No genes
Cytochrome c-type protein NrfB precursor No genes
Cytochrome c552 precursor (EC 1.7.2.2) No genes
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) No genes
Ferredoxin-type protein NapG (periplasmic nitrate reductase) No genes
Nitrate ABC transporter, ATP-binding protein IAI47_11175 -2.1
Nitrate ABC transporter, nitrate-binding protein IAI47_11185 -2.7
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit No genes
Nitrate/nitrite response regulator protein IAI47_04245 +0.0
  IAI47_05315 -1.3
Nitrate/nitrite sensor protein (EC 2.7.3.-) IAI47_05320 -1.0
Nitrate/nitrite transporter IAI47_04250 +0.0
  IAI47_20795 -0.3
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) IAI47_11170 -3.2
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) No genes
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein No genes
NrfD protein No genes
Periplasmic nitrate reductase component NapD No genes
Periplasmic nitrate reductase component NapE No genes
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) No genes
Polyferredoxin NapH (periplasmic nitrate reductase) No genes
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) IAI47_04255 +0.1
Respiratory nitrate reductase beta chain (EC 1.7.99.4) IAI47_04260 +0.1
Respiratory nitrate reductase delta chain (EC 1.7.99.4) IAI47_04265 +0.1
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) IAI47_04270 +0.0
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT IAI47_11190 -3.6

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