SEED Subsystem: DNA Repair Base Excision in Rhodanobacter denitrificans FW104-10B01

Experiments:

Role Gene Name R2A with lithium chloride 15.625 mM  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) LRK54_RS10975 +0.1
  LRK54_RS17440 N.D.
DNA polymerase I (EC 2.7.7.7) LRK54_RS03865 +0.1
  LRK54_RS06840 -1.2
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) LRK54_RS10225 +0.0
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) LRK54_RS14440 +0.1
  LRK54_RS18100 +0.3
Endonuclease III (EC 4.2.99.18) LRK54_RS01850 +0.1
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) LRK54_RS17465 -1.0
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) LRK54_RS10815 +0.0
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) LRK54_RS00315 -0.1
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 LRK54_RS10940 -0.0

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