SEED Subsystem: Queuosine-Archaeosine Biosynthesis in Methanococcus maripaludis JJ

Experiments:

Role Gene Name H2 N-free with 2mM Adenosine  
⨯
COG2047: Uncharacterized protein (ATP-grasp superfamily) MMJJ_RS00390 -0.6
  MMJJ_RS06085 -0.3
Dihydroneopterin triphosphate pyrophosphohydolase No genes
Dihydroneopterin triphosphate pyrophosphohydolase type 2 No genes
GTP cyclohydrolase I (EC 3.5.4.16) type 1 No genes
GTP cyclohydrolase I (EC 3.5.4.16) type 2 MMJJ_RS05265 N.D.
Glutamine amidotransferases class-II (GATase) No genes
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) No genes
NADPH dependent preQ0 reductase No genes
NADPH dependent preQ0 reductase-like No genes
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) No genes
Peptidyl-prolyl cis-trans isomerase ppiB (EC 5.2.1.8) No genes
Permease of the drug/metabolite transporter (DMT) superfamily MMJJ_RS01535 +0.2
  MMJJ_RS02155 +0.4
  MMJJ_RS04215 +2.7
  MMJJ_RS06205 +3.3
Putative preQ0 transporter MMJJ_RS00930 +0.1
Queuosine Biosynthesis QueC ATPase MMJJ_RS04135 -0.4
Queuosine Biosynthesis QueE Radical SAM MMJJ_RS05040 +0.0
Queuosine biosynthesis QueD, PTPS-I MMJJ_RS07920 +0.3
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB No genes
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) No genes
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter No genes
Substrate-specific component STY3230 of queuosine-regulated ECF transporter MMJJ_RS01480 -0.2
  MMJJ_RS03090 +0.1
  MMJJ_RS04855 +0.0
  MMJJ_RS04860 +0.1
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 MMJJ_RS01860 -0.6
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2 MMJJ_RS06165 -1.0
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5 No genes
glutamyl-Q-tRNA synthetase No genes
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) No genes
tRNA-guanine transglycosylase (EC 2.4.2.29) No genes

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