SEED Subsystem: DNA-replication in Sphingomonas koreensis DSMZ 15582

Experiments:

Role Gene Name Cisplatin 0.025 mg/ml  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) Ga0059261_0958 -1.6
ATP-dependent DNA helicase RecQ Ga0059261_2261 -0.6
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA Ga0059261_0226 N.D.
  Ga0059261_3588 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) Ga0059261_0822 N.D.
DNA polymerase I (EC 2.7.7.7) Ga0059261_2244 -1.6
DNA polymerase II (EC 2.7.7.7) No genes
DNA polymerase III alpha subunit (EC 2.7.7.7) Ga0059261_0338 N.D.
  Ga0059261_2476 -0.2
DNA polymerase III beta subunit (EC 2.7.7.7) Ga0059261_1412 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) Ga0059261_0874 N.D.
DNA polymerase III delta prime subunit (EC 2.7.7.7) Ga0059261_0124 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) Ga0059261_2210 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) Ga0059261_2192 N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) Ga0059261_0669 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) Ga0059261_0002 N.D.
  Ga0059261_4239 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN Ga0059261_1026 -1.4
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication Ga0059261_1421 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA Ga0059261_0820 N.D.
Holliday junction DNA helicase RuvB Ga0059261_0819 N.D.
Primosomal protein I No genes
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein Ga0059261_0204 -4.0
Recombination protein RecR Ga0059261_0645 -5.1
Replicative DNA helicase (EC 3.6.1.-) Ga0059261_1503 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Ga0059261_3089 N.D.
Transcription-repair coupling factor Ga0059261_0960 -1.3

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