SEED Subsystem: Heat shock dnaK gene cluster extended in Pseudomonas fluorescens FW300-N2E3

Experiments:

Role Gene Name Lomefloxacin 0.001 mM  
⨯
Chaperone protein DnaJ AO353_05645 N.D.
Chaperone protein DnaK AO353_05650 N.D.
DNA replication intiation control protein YabA No genes
FIG001341: Probable Fe(2+)-trafficking protein YggX AO353_12045 +1.0
FIG009886: phosphoesterase No genes
Glutathione synthetase (EC 6.3.2.3) AO353_08110 +2.2
Heat shock protein GrpE AO353_05655 N.D.
Heat-inducible transcription repressor HrcA No genes
HspR, transcriptional repressor of DnaK operon No genes
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent No genes
MiaB family protein, possibly involved in tRNA or rRNA modification No genes
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) AO353_08195 +1.8
Putative coproporphyrinogen III oxidase of BS HemN-type, oxygen-independent (EC 1.3.99.22), in heat shock gene cluster No genes
RNA polymerase sigma factor RpoH AO353_08235 N.D.
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB AO353_08200 +2.5
Ribonuclease PH (EC 2.7.7.56) AO353_09260 +1.4
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) AO353_08050 +1.8
  AO353_12340 N.D.
Ribosomal protein L11 methyltransferase (EC 2.1.1.-) AO353_13670 -0.3
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) AO353_11765 -0.6
Signal peptidase-like protein No genes
Translation elongation factor LepA AO353_04520 +3.4
Xanthosine/inosine triphosphate pyrophosphatase No genes
rRNA small subunit methyltransferase I AO353_15290 -2.0
tmRNA-binding protein SmpB AO353_05690 +1.4

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