SEED Subsystem: DNA-replication in Pseudomonas fluorescens FW300-N2E3

Experiments:

Role Gene Name Lomefloxacin 0.001 mM  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) AO353_09320 -3.3
ATP-dependent DNA helicase RecQ AO353_18430 +0.1
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA AO353_02665 N.D.
  AO353_10470 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) AO353_03590 -3.2
DNA polymerase I (EC 2.7.7.7) AO353_10930 -2.6
DNA polymerase II (EC 2.7.7.7) AO353_29350 -0.1
DNA polymerase III alpha subunit (EC 2.7.7.7) AO353_06275 -0.2
  AO353_16535 N.D.
  AO353_22715 -0.2
DNA polymerase III beta subunit (EC 2.7.7.7) AO353_10475 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) AO353_04540 N.D.
DNA polymerase III delta prime subunit (EC 2.7.7.7) AO353_01335 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) AO353_06420 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) AO353_07575 -0.3
  AO353_23555 N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) AO353_00685 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) AO353_07380 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN AO353_05660 -3.0
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) AO353_06040 -1.6
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) AO353_06045 -1.2
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) AO353_06050 -1.3
Helicase PriA essential for oriC/DnaA-independent DNA replication AO353_12445 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA AO353_03585 -2.7
Holliday junction DNA helicase RuvB AO353_03580 -2.8
Primosomal protein I AO353_26325 -0.2
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein AO353_16805 -2.8
Recombination protein RecR AO353_00675 -0.2
Replicative DNA helicase (EC 3.6.1.-) AO353_13230 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) AO353_04320 -1.2
Transcription-repair coupling factor AO353_00435 +1.2

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