SEED Subsystem: Bacterial Chemotaxis in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name outer cut, LB soft agar motility assay  
⨯
Aerotaxis sensor receptor protein No genes
Chemotaxis protein CheC -- inhibitor of MCP methylation Pf6N2E2_1641 -0.3
Chemotaxis protein CheD Pf6N2E2_1776 +0.2
  Pf6N2E2_414 -1.7
Chemotaxis protein CheV (EC 2.7.3.-) Pf6N2E2_2415 -0.8
  Pf6N2E2_5313 -1.6
  Pf6N2E2_5692 +1.4
Chemotaxis protein CheX No genes
Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) Pf6N2E2_1503 -0.2
  Pf6N2E2_1777 +0.1
  Pf6N2E2_3121 -0.1
  Pf6N2E2_415 -0.0
  Pf6N2E2_5693 -2.4
  Pf6N2E2_816 +1.6
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY Pf6N2E2_1783 -0.2
  Pf6N2E2_2572 -5.8
  Pf6N2E2_420 +0.8
  Pf6N2E2_5684 -0.5
  Pf6N2E2_818 +1.9
Chemotaxis response - phosphatase CheZ Pf6N2E2_2571 -1.1
Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) Pf6N2E2_1775 +0.5
  Pf6N2E2_2569 -4.3
  Pf6N2E2_3118 -0.8
  Pf6N2E2_413 -0.2
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) Pf6N2E2_3233 +0.1
  Pf6N2E2_3306 +0.1
  Pf6N2E2_3307 -0.0
  Pf6N2E2_3308 -0.3
  Pf6N2E2_3310 -0.4
  Pf6N2E2_4378 +0.3
Flagellar motor switch protein FliG Pf6N2E2_2592 -4.3
Flagellar motor switch protein FliM Pf6N2E2_2583 -5.5
Flagellar motor switch protein FliN Pf6N2E2_2582 -6.6
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) No genes
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Pf6N2E2_1646 -0.0
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) Pf6N2E2_1170 +0.5
  Pf6N2E2_1780 -0.0
  Pf6N2E2_2484 -1.3
  Pf6N2E2_278 -0.3
  Pf6N2E2_3123 +0.1
  Pf6N2E2_3250 +0.1
  Pf6N2E2_3342 -0.0
  Pf6N2E2_3433 -0.6
  Pf6N2E2_3509 +0.3
  Pf6N2E2_3689 -0.4
  Pf6N2E2_3788 +0.3
  Pf6N2E2_3789 -0.1
  Pf6N2E2_3865 +0.2
  Pf6N2E2_417 -0.0
  Pf6N2E2_4185 -0.0
  Pf6N2E2_44 -0.6
  Pf6N2E2_4409 -0.2
  Pf6N2E2_5131 +0.1
  Pf6N2E2_5639 +0.3
  Pf6N2E2_5892 -0.0
  Pf6N2E2_738 -0.4
  Pf6N2E2_772 +0.1
Methyl-accepting chemotaxis protein II (aspartate chemoreceptor protein) No genes
Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) No genes
Methyl-accepting chemotaxis protein IV (dipeptide chemoreceptor protein) No genes
Positive regulator of CheA protein activity (CheW) Pf6N2E2_1778 -0.8
  Pf6N2E2_1779 -0.0
  Pf6N2E2_2564 -4.3
  Pf6N2E2_416 +0.3
Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) Pf6N2E2_991 +0.3
Signal transduction histidine kinase CheA (EC 2.7.3.-) Pf6N2E2_1781 +0.9
  Pf6N2E2_2570 -3.7
  Pf6N2E2_418 -0.0
  Pf6N2E2_4617 +0.8

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