SEED Subsystem: Proteolysis in bacteria, ATP-dependent in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name inner cut, LB soft agar motility assay  
⨯
ATP-dependent Clp protease ATP-binding subunit ClpA Pf6N2E2_292 -1.7
ATP-dependent Clp protease ATP-binding subunit ClpX Pf6N2E2_2217 +6.8
ATP-dependent Clp protease adaptor protein ClpS Pf6N2E2_291 +0.3
ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Pf6N2E2_2218 +3.8
ATP-dependent Clp protease, ATP-binding subunit ClpC No genes
ATP-dependent hsl protease ATP-binding subunit HslU Pf6N2E2_3770 -1.6
ATP-dependent protease HslV (EC 3.4.25.-) Pf6N2E2_3769 N.D.
ATP-dependent protease La (EC 3.4.21.53) No genes
ATP-dependent protease La (EC 3.4.21.53) Type I Pf6N2E2_2216 N.D.
  Pf6N2E2_3154 -0.3
ATP-dependent protease La (EC 3.4.21.53) Type II Pf6N2E2_5093 +0.6
ATP-dependent protease domain protein (EC 3.4.21.-) No genes
ATPase, AFG1 family Pf6N2E2_5331 -2.7
ClpB protein Pf6N2E2_191 -0.2
  Pf6N2E2_4303 -0.1
  Pf6N2E2_4327 -0.4
  Pf6N2E2_5129 -3.1
  Pf6N2E2_549 +0.1
ClpXP protease specificity-enhancing factor No genes
Nucleotide excision repair protein, with UvrB/UvrC motif No genes
Outer membrane stress sensor protease DegQ, serine protease No genes
Outer membrane stress sensor protease DegS Pf6N2E2_5255 +1.6

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