SEED Subsystem: Bacterial Chemotaxis in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name inner cut, LB soft agar motility assay  
⨯
Aerotaxis sensor receptor protein No genes
Chemotaxis protein CheC -- inhibitor of MCP methylation Pf6N2E2_1641 +0.2
Chemotaxis protein CheD Pf6N2E2_1776 -1.2
  Pf6N2E2_414 +0.4
Chemotaxis protein CheV (EC 2.7.3.-) Pf6N2E2_2415 -0.7
  Pf6N2E2_5313 -2.1
  Pf6N2E2_5692 +3.3
Chemotaxis protein CheX No genes
Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) Pf6N2E2_1503 -0.1
  Pf6N2E2_1777 +0.2
  Pf6N2E2_3121 +0.2
  Pf6N2E2_415 +0.1
  Pf6N2E2_5693 -3.8
  Pf6N2E2_816 +1.9
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY Pf6N2E2_1783 +0.1
  Pf6N2E2_2572 -3.4
  Pf6N2E2_420 -0.5
  Pf6N2E2_5684 -0.6
  Pf6N2E2_818 +2.3
Chemotaxis response - phosphatase CheZ Pf6N2E2_2571 -1.4
Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) Pf6N2E2_1775 -0.0
  Pf6N2E2_2569 -4.5
  Pf6N2E2_3118 -1.8
  Pf6N2E2_413 +0.2
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) Pf6N2E2_3233 -0.2
  Pf6N2E2_3306 +0.1
  Pf6N2E2_3307 +0.0
  Pf6N2E2_3308 -0.7
  Pf6N2E2_3310 -0.2
  Pf6N2E2_4378 +0.1
Flagellar motor switch protein FliG Pf6N2E2_2592 -4.4
Flagellar motor switch protein FliM Pf6N2E2_2583 -5.2
Flagellar motor switch protein FliN Pf6N2E2_2582 -4.3
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) No genes
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE Pf6N2E2_1646 +0.3
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) Pf6N2E2_1170 +0.1
  Pf6N2E2_1780 +0.2
  Pf6N2E2_2484 -1.0
  Pf6N2E2_278 -0.1
  Pf6N2E2_3123 -0.2
  Pf6N2E2_3250 +0.0
  Pf6N2E2_3342 +0.3
  Pf6N2E2_3433 -1.4
  Pf6N2E2_3509 +0.9
  Pf6N2E2_3689 +0.4
  Pf6N2E2_3788 -0.0
  Pf6N2E2_3789 +0.3
  Pf6N2E2_3865 -0.4
  Pf6N2E2_417 -1.4
  Pf6N2E2_4185 +0.2
  Pf6N2E2_44 -0.2
  Pf6N2E2_4409 +0.1
  Pf6N2E2_5131 +0.5
  Pf6N2E2_5639 -0.6
  Pf6N2E2_5892 -0.1
  Pf6N2E2_738 +0.5
  Pf6N2E2_772 -0.1
Methyl-accepting chemotaxis protein II (aspartate chemoreceptor protein) No genes
Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) No genes
Methyl-accepting chemotaxis protein IV (dipeptide chemoreceptor protein) No genes
Positive regulator of CheA protein activity (CheW) Pf6N2E2_1778 +1.1
  Pf6N2E2_1779 +0.4
  Pf6N2E2_2564 -3.6
  Pf6N2E2_416 +0.6
Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) Pf6N2E2_991 -0.1
Signal transduction histidine kinase CheA (EC 2.7.3.-) Pf6N2E2_1781 +0.9
  Pf6N2E2_2570 -4.0
  Pf6N2E2_418 -0.2
  Pf6N2E2_4617 +2.2

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