SEED Subsystem: tRNA processing in Pseudomonas fluorescens FW300-N2E3

Experiments:

Role Gene Name Rifampicin 0.005 mg/ml  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) AO353_03295 -0.1
Ribonuclease D (EC 3.1.26.3) AO353_17855 -3.9
Ribonuclease P protein component (EC 3.1.26.5) AO353_10465 N.D.
Ribonuclease PH (EC 2.7.7.56) AO353_09260 -1.1
Ribonuclease T (EC 3.1.13.-) AO353_04120 N.D.
Ribonuclease Z (EC 3.1.26.11) No genes
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) AO353_16595 +0.1
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) AO353_16865 -0.2
  AO353_20660 +0.7
tRNA pseudouridine synthase B (EC 4.2.1.70) AO353_05550 -2.1
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase AO353_06375 +1.0
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) AO353_16010 N.D.
tRNAHis-5'-guanylyltransferase No genes

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