SEED Subsystem: Photorespiration (oxidative C2 cycle) in Pseudomonas fluorescens FW300-N2E3

Experiments:

Role Gene Name Rifampicin 0.005 mg/ml  
⨯
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) AO353_01930 +0.4
  AO353_17140 -0.1
2-oxoglutarate/malate translocator No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) AO353_03510 +0.3
  AO353_08735 +0.1
Catalase (EC 1.11.1.6) AO353_02490 +0.0
  AO353_06865 -2.0
  AO353_13970 +0.2
  AO353_20310 +0.1
  AO353_23210 -0.0
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) No genes
D-glycerate 3-kinase (EC 2.7.1.31), plant type No genes
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Expressed protein possibly involved in photorespiration No genes
Glycerate kinase (EC 2.7.1.31) AO353_03605 +0.2
  AO353_26900 +0.1
Glycine cleavage system H protein AO353_03495 +0.4
  AO353_08730 -0.2
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) AO353_03500 +0.4
  AO353_08720 -0.1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE AO353_21305 -0.2
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF AO353_21300 -0.2
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD AO353_21310 +0.2
Glycolate oxidase (EC 1.1.3.15) No genes
Glycolate permease No genes
Glyoxylate carboligase (EC 4.1.1.47) AO353_01920 -0.0
Hydroxypyruvate reductase (EC 1.1.1.81) No genes
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) No genes
Malate synthase (EC 2.3.3.9) No genes
Malate synthase G (EC 2.3.3.9) AO353_07560 +0.1
Malyl-CoA lyase (EC 4.1.3.24) No genes
Phosphoglycolate phosphatase (EC 3.1.3.18) AO353_07235 -0.0
  AO353_10765 -0.0
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) AO353_07665 +0.1
  AO353_10495 -0.1
  AO353_10530 -0.1
  AO353_14020 N.D.
  AO353_14025 -0.2
  AO353_29335 +0.1
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes

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