SEED Subsystem: Oxidative stress in Pseudomonas fluorescens FW300-N2E3

Experiments:

Role Gene Name Rifampicin 0.005 mg/ml  
⨯
Alkyl hydroperoxide reductase subunit C-like protein AO353_04125 -0.3
  AO353_08675 +0.2
  AO353_28185 -0.4
Catalase (EC 1.11.1.6) AO353_02490 +0.0
  AO353_06865 -2.0
  AO353_13970 +0.2
  AO353_20310 +0.1
  AO353_23210 -0.0
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins AO353_23820 N.D.
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR AO353_05665 N.D.
Ferroxidase (EC 1.16.3.1) No genes
Fumarate and nitrate reduction regulatory protein AO353_00660 -0.9
Heme oxygenase HemO, associated with heme uptake AO353_03450 +0.4
Hydrogen peroxide-inducible genes activator AO353_05925 -0.1
  AO353_09315 -2.1
  AO353_11835 +0.0
  AO353_25410 +0.1
Iron-binding ferritin-like antioxidant protein No genes
Iron-responsive regulator Irr No genes
Manganese superoxide dismutase (EC 1.15.1.1) No genes
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR No genes
NnrS protein involved in response to NO AO353_22015 -0.2
Non-specific DNA-binding protein Dps No genes
Organic hydroperoxide resistance protein AO353_19085 -0.4
Organic hydroperoxide resistance transcriptional regulator AO353_19090 +0.7
  AO353_19165 +0.1
Paraquat-inducible protein A AO353_14550 +0.2
  AO353_14555 +0.2
  AO353_29365 -0.8
  AO353_29370 -0.0
Paraquat-inducible protein B AO353_14560 +0.3
  AO353_29375 -0.0
Peroxidase (EC 1.11.1.7) AO353_23210 -0.0
  AO353_24220 +0.0
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) No genes
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR No genes
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS No genes
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) No genes
Superoxide dismutase [Fe] (EC 1.15.1.1) AO353_03930 N.D.
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR AO353_10910 N.D.
bacteriophytochrome heme oxygenase BphO No genes
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family AO353_11565 +0.2
  AO353_19870 +0.1
transcriptional regulator, Fur family No genes

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